Paleogenomics at Tor Vergata
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1. List of Tools
2. First step to set-up your machine
3. Useful commands
4. Working on HPC with Slurm
5. Quality filtering of reads
6. Metagenomic screening of shotgun data
7. Alignment of reads to a reference genome
8. Variant calling and visualization
9. Filtering, annotating and combining SNPs
10. Analysis of Metagenomic data
11. Antimicrobial Resistance (AMR) analysis
Paleogenomics at Tor Vergata
Index
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Index