Paleogenomics at Tor Vergata
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  • 1. List of Tools
  • 2. First step to set-up your machine
  • 3. Useful commands
  • 4. Working on HPC with Slurm
  • 5. Quality filtering of reads
  • 6. Metagenomic screening of shotgun data
  • 7. Alignment of reads to a reference genome
  • 8. Variant calling and visualization
  • 9. Filtering, annotating and combining SNPs
  • 10. Analysis of Metagenomic data
  • 11. Antimicrobial Resistance (AMR) analysis
Paleogenomics at Tor Vergata
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© Copyright 2021, Claudio Ottoni. Revision 2ff80170.

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